Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted oxidoreductase | SAMN05421757_10979 | Not Available | Negative | 4218927 - 4219907 | 35921.6 |
| d-mannonate dehydratase | SAMN05421757_10980 | Not Available | Negative | 4219948 - 4221183 | 45559.1 |
| sugar phosphate isomerase/epimerase | SAMN05421757_10981 | Not Available | Negative | 4221211 - 4222035 | 29580.6 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_10982 | Not Available | Negative | 4222084 - 4223016 | 34506.9 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_10983 | Not Available | Negative | 4223023 - 4223928 | 33735.1 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_10984 | Not Available | Negative | 4224036 - 4225340 | 46752.3 |
| transcriptional regulator, laci family | SAMN05421757_10985 | Not Available | Positive | 4225769 - 4226845 | 38594.4 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421757_10986 | Not Available | Positive | 4226842 - 4227579 | 25524.7 |
| phosphoglycerate dehydrogenase | SAMN05421757_10987 | Not Available | Positive | 4227616 - 4228644 | 36323.1 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_10988 | Not Available | Positive | 4228699 - 4229769 | 38235.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
