Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN05421757_101360 | Not Available | Positive | 378494 - 378733 | 8389.12 |
| sulfotransferase family protein | SAMN05421757_101361 | Not Available | Negative | 378970 - 379788 | 31644.4 |
| core-2/i-branching enzyme | SAMN05421757_101362 | Not Available | Positive | 379927 - 381504 | 60359.6 |
| histidine triad (hit) family protein | SAMN05421757_101363 | Not Available | Positive | 381525 - 381908 | 13820.8 |
| cyanophycin synthetase | SAMN05421757_101364 | Not Available | Negative | 382000 - 383040 | 36180.3 |
| abc-2 type transport system atp-binding protein | SAMN05421757_101365 | Not Available | Negative | 383041 - 383985 | 34077.1 |
| uncharacterized conserved protein, contains zn-finger domain | SAMN05421757_101366 | Not Available | Positive | 384101 - 384283 | 6453.62 |
| cation:h+ antiporter | SAMN05421757_101367 | Not Available | Negative | 384293 - 385309 | 33892.2 |
| dna polymerase i | SAMN05421757_101368 | Not Available | Positive | 385393 - 388188 | 101672.0 |
| hypothetical protein | SAMN05421757_101369 | Not Available | Negative | 388076 - 388561 | 16888.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
