Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna . bacterial ssu | Not Available | Not Available | Positive | 438 - 1910 | 18.01 |
| sulfatase-modifying factor enzyme 1 | SAMN05421757_1011 | Not Available | Negative | 34 - 744 | 26727.2 |
| hypothetical protein | SAMN05421757_1012 | Not Available | Negative | 1193 - 1798 | 22129.7 |
| 23s ribosomal rna . bacterial lsu | Not Available | Not Available | Positive | 2688 - 5512 | 18.01 |
| deoxyribodipyrimidine photo-lyase family protein (cryptochrome) | SAMN05421757_1013 | Not Available | Negative | 2150 - 3430 | 48099.9 |
| protein of unknown function, duf393 | SAMN05421757_1014 | Not Available | Positive | 3668 - 3961 | 10811.1 |
| protein of unknown function | SAMN05421757_1015 | Not Available | Positive | 3958 - 4347 | 13402.9 |
| uncharacterized conserved protein, duf427 family | SAMN05421757_1016 | Not Available | Positive | 4404 - 4826 | 15365.4 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | Positive | 5693 - 5807 | 18.01 |
| ribonucleoside-diphosphate reductase class ii | SAMN05421757_1017 | Not Available | Negative | 5365 - 7629 | 83356.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
