Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative spermidine/putrescine transport system permease protein | SAMN05421757_1098 | Not Available | Negative | 4138680 - 4139468 | 27939.5 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_1099 | Not Available | Negative | 4139473 - 4140300 | 29539.5 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05421757_10910 | Not Available | Negative | 4140366 - 4141382 | 36257.3 |
| hypothetical protein | SAMN05421757_10911 | Not Available | Positive | 4141714 - 4142820 | 40086.5 |
| thiamine transport system substrate-binding protein | SAMN05421757_10913 | Not Available | Positive | 4143011 - 4143991 | 35814.9 |
| thiamine transport system permease protein | SAMN05421757_10914 | Not Available | Positive | 4143967 - 4145475 | 52431.9 |
| thiamine transport system atp-binding protein | SAMN05421757_10915 | Not Available | Positive | 4145462 - 4146163 | 24842.1 |
| small redox-active disulfide protein 2 | SAMN05421757_10916 | Not Available | Negative | 4146267 - 4146503 | 8098.95 |
| hypothetical protein | SAMN05421757_10917 | Not Available | Negative | 4146543 - 4147604 | 38052.6 |
| transcriptional regulator, arsr family | SAMN05421757_10918 | Not Available | Negative | 4147601 - 4147888 | 10806.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
