Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_108251 | Not Available | Negative | 4124407 - 4124811 | 14725.8 |
| carbonic anhydrase | SAMN05421757_108252 | Not Available | Positive | 4124958 - 4125626 | 24502.3 |
| aspartate semialdehyde dehydrogenase | SAMN05421757_108253 | Not Available | Negative | 4125758 - 4126780 | 37242.4 |
| protein-s-isoprenylcysteine o-methyltransferase ste14 | SAMN05421757_1091 | Not Available | Negative | 4127887 - 4128636 | 27821.3 |
| hypothetical protein | SAMN05421757_1092 | Not Available | Positive | 4128785 - 4129219 | 15184.7 |
| ca2+-binding protein, rtx toxin-related | SAMN05421757_1093 | Not Available | Negative | 4130453 - 4133044 | 90725.5 |
| purine nucleosidase/pyrimidine-specific ribonucleoside hydrolase | SAMN05421757_1094 | Not Available | Negative | 4134055 - 4134936 | 30328.5 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN05421757_1095 | Not Available | Negative | 4134933 - 4136303 | 48994.1 |
| cytosine/adenosine deaminase | SAMN05421757_1096 | Not Available | Negative | 4136300 - 4137625 | 47604.4 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05421757_1097 | Not Available | Negative | 4137622 - 4138683 | 37942.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
