Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase f0 subcomplex c subunit | SAMN05421757_101350 | Not Available | Positive | 370211 - 370447 | 7540.33 |
| f-type h+-transporting atpase subunit b | SAMN05421757_101351 | Not Available | Positive | 370532 - 371116 | 20059.7 |
| atp synthase f0 subcomplex b subunit | SAMN05421757_101352 | Not Available | Positive | 371116 - 371676 | 19743.8 |
| choline dehydrogenase | SAMN05421757_101353 | Not Available | Positive | 372023 - 373717 | 60605.6 |
| hypothetical protein | SAMN05421757_101354 | Not Available | Negative | 373745 - 374032 | 10410.7 |
| transcriptional regulator, gntr family | SAMN05421757_101355 | Not Available | Negative | 374130 - 374897 | 28859.7 |
| outer membrane protein ompa | SAMN05421757_101356 | Not Available | Negative | 374999 - 375652 | 22088.2 |
| arac family transcriptional regulator, regulatory protein of adaptative response / methylated-dna-[protein]-cysteine methyltransferase | SAMN05421757_101357 | Not Available | Negative | 375779 - 376627 | 30714.9 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN05421757_101358 | Not Available | Positive | 376753 - 377394 | 23774.9 |
| sugar or nucleoside kinase, ribokinase family | SAMN05421757_101359 | Not Available | Positive | 377391 - 378383 | 35136.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
