Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial translation initiation factor 2 (bif-2) | SAMN05421757_108211 | Not Available | Positive | 4080225 - 4082741 | 90675.2 |
| hypothetical protein | SAMN05421757_108212 | Not Available | Negative | 4082852 - 4082992 | 5070.14 |
| 8-oxo-dgtp diphosphatase | SAMN05421757_108213 | Not Available | Negative | 4083126 - 4083524 | 14820.0 |
| glutamate n-acetyltransferase | SAMN05421757_108214 | Not Available | Negative | 4083521 - 4084768 | 42179.0 |
| peptidyl-prolyl cis-trans isomerase c | SAMN05421757_108215 | Not Available | Negative | 4084801 - 4085649 | 29797.1 |
| protein translocase subunit seca | SAMN05421757_108216 | Not Available | Positive | 4085825 - 4088539 | 102151.0 |
| hypothetical protein | SAMN05421757_108217 | Not Available | Positive | 4088698 - 4089705 | 34628.9 |
| molecular chaperone dnaj | SAMN05421757_108218 | Not Available | Negative | 4089778 - 4090929 | 40995.1 |
| molecular chaperone dnak | SAMN05421757_108219 | Not Available | Negative | 4091004 - 4092917 | 68712.4 |
| alkylated dna repair protein (dna oxidative demethylase) | SAMN05421757_108220 | Not Available | Positive | 4093085 - 4093717 | 22859.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
