Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted amidohydrolase | SAMN05421757_108201 | Not Available | Positive | 4072440 - 4073273 | 30480.3 |
| transcriptional regulator, marr family | SAMN05421757_108202 | Not Available | Positive | 4073270 - 4073710 | 16313.8 |
| 2'-5' rna ligase | SAMN05421757_108203 | Not Available | Positive | 4073751 - 4074293 | 19584.8 |
| 3-demethylubiquinone-9 3-methyltransferase | SAMN05421757_108204 | Not Available | Negative | 4074298 - 4075038 | 26931.2 |
| proline iminopeptidase | SAMN05421757_108205 | Not Available | Positive | 4075109 - 4076098 | 37076.1 |
| hypothetical protein | SAMN05421757_108206 | Not Available | Positive | 4076223 - 4076588 | 13773.8 |
| membrane protein deda, snare-associated domain | SAMN05421757_108207 | Not Available | Positive | 4076585 - 4077220 | 22128.3 |
| ribosome maturation factor rimp | SAMN05421757_108208 | Not Available | Positive | 4077329 - 4077928 | 22331.4 |
| nusa antitermination factor | SAMN05421757_108209 | Not Available | Positive | 4077946 - 4079568 | 60541.4 |
| hypothetical protein | SAMN05421757_108210 | Not Available | Positive | 4079587 - 4080228 | 22367.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
