Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna m(5)u-1939 methyltransferase | SAMN05421757_108191 | Not Available | Positive | 4065000 - 4066229 | 43278.9 |
| voltage-gated sodium channel | SAMN05421757_108192 | Not Available | Positive | 4066257 - 4067075 | 30135.5 |
| l,d-transpeptidase catalytic domain | SAMN05421757_108193 | Not Available | Positive | 4067158 - 4067655 | 18614.2 |
| cysteine-rich secretory protein family protein | SAMN05421757_108194 | Not Available | Negative | 4067707 - 4068201 | 17883.0 |
| lipoprotein-anchoring transpeptidase erfk/srfk | SAMN05421757_108195 | Not Available | Positive | 4068362 - 4068958 | 22008.1 |
| hypothetical protein | SAMN05421757_108196 | Not Available | Positive | 4069100 - 4069285 | 6045.37 |
| ferrochelatase | SAMN05421757_108197 | Not Available | Negative | 4069422 - 4070456 | 39094.5 |
| methyltransferase domain-containing protein | SAMN05421757_108198 | Not Available | Negative | 4070515 - 4071297 | 28115.4 |
| comf family protein | SAMN05421757_108199 | Not Available | Positive | 4071371 - 4072138 | 27205.2 |
| glutaredoxin 3 | SAMN05421757_108200 | Not Available | Positive | 4072167 - 4072427 | 9542.53 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
