Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonine ammonia-lyase | SAMN05421757_108181 | Not Available | Positive | 4054128 - 4055372 | 45072.2 |
| hpt domain-containing protein | SAMN05421757_108182 | Not Available | Negative | 4055398 - 4055730 | 12220.5 |
| sigma-b regulation protein rsbu (phosphoserine phosphatase) | SAMN05421757_108183 | Not Available | Positive | 4055862 - 4057190 | 48394.2 |
| 8-oxo-dgtp diphosphatase | SAMN05421757_108184 | Not Available | Negative | 4057212 - 4057670 | 17175.8 |
| molecular chaperone hsp33 | SAMN05421757_108185 | Not Available | Positive | 4057724 - 4058719 | 36262.7 |
| 8-oxo-dgtp pyrophosphatase mutt, nudix family | SAMN05421757_108186 | Not Available | Positive | 4058706 - 4059311 | 22312.6 |
| poly(a) polymerase | SAMN05421757_108187 | Not Available | Positive | 4059311 - 4060459 | 41647.9 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05421757_108188 | Not Available | Positive | 4060505 - 4061101 | 21090.0 |
| atp-binding cassette, subfamily b, multidrug efflux pump | SAMN05421757_108189 | Not Available | Positive | 4061306 - 4063159 | 67973.0 |
| atp-binding cassette, subfamily b | SAMN05421757_108190 | Not Available | Positive | 4063156 - 4065003 | 66589.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
