Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, non-motile, rod-shaped bacterium that exhibits aerobic respiration. This bacterium thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The genomic characteristics of T. sediminicola include a single replicon, as evidenced by its accession number FZOY00000000.1. This genetic simplicity may suggest a streamlined metabolic and reproductive strategy, which is often advantageous for survival in specific ecological niches. Given its aerobic nature and mesophilic growth requirements, T. sediminicola is likely well-adapted to environments with ample oxygen and moderate temperatures, such as sediment habitats. The presence of such bacteria in sediment ecosystems can play a significant role in biogeochemical cycles, particularly in the breakdown of organic matter and the cycling of nutrients. Their metabolic activities could contribute to the overall health and functionality of the sediment environment, supporting diverse microbial communities and influencing sediment composition. In summary, Tropicimonas sediminicola strain DSM 29339 exemplifies a specialized microbial organism adapted to specific environmental conditions, emphasizing the ecological importance of mesophilic, aerobic bacteria in sedimentary ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339 genome assembly,

Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent hsluv protease atp-binding subunit hsluSAMN05421757_108151Not AvailablePositive4023299 - 402460648219.8
predicted arabinose efflux permease, mfs familySAMN05421757_108152Not AvailablePositive4024727 - 402597443883.1
dna-nicking endonuclease, smr domainSAMN05421757_108153Not AvailableNegative4025936 - 402655022573.3
membrane-bound lytic murein transglycosylase aSAMN05421757_108154Not AvailableNegative4026561 - 402754135515.4
predicted lipid-binding transport protein, tim44 familySAMN05421757_108155Not AvailableNegative4027538 - 402820624552.2
upf0716 protein fxsaSAMN05421757_108156Not AvailablePositive4028312 - 402879717654.8
protein translocase subunit secbSAMN05421757_108157Not AvailablePositive4028860 - 402939019737.5
dna polymerase-3 subunit epsilonSAMN05421757_108158Not AvailableNegative4029488 - 403018025310.9
dephospho-coa kinaseSAMN05421757_108159Not AvailableNegative4030173 - 403076621313.5
shikimate dehydrogenaseSAMN05421757_108160Not AvailableNegative4030763 - 403159629397.5

Displaying genes 3811 – 3820 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.