Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421757_108141 | Not Available | Negative | 4013875 - 4014762 | 31948.9 |
| protein of unknown function | SAMN05421757_108142 | Not Available | Negative | 4014764 - 4015114 | 13083.9 |
| catalase | SAMN05421757_108143 | Not Available | Positive | 4015537 - 4017597 | 75929.1 |
| protein of unknown function | SAMN05421757_108144 | Not Available | Positive | 4017762 - 4018277 | 18532.8 |
| uncharacterized conserved protein yjbj, upf0337 family | SAMN05421757_108145 | Not Available | Negative | 4018486 - 4018683 | 7657.87 |
| trk system potassium uptake protein trka | SAMN05421757_108146 | Not Available | Positive | 4018892 - 4019554 | 24019.1 |
| trk system potassium uptake protein trkh | SAMN05421757_108147 | Not Available | Positive | 4019556 - 4020887 | 46948.4 |
| putative n6-adenine-specific dna methylase | SAMN05421757_108148 | Not Available | Negative | 4020894 - 4022009 | 39888.9 |
| hypothetical protein | SAMN05421757_108149 | Not Available | Negative | 4022067 - 4022231 | 5330.6 |
| lysozyme | SAMN05421757_108150 | Not Available | Negative | 4022311 - 4023108 | 30017.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
