Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein | SAMN05421757_108120 | Not Available | Negative | 3996194 - 3997420 | 44084.2 |
| hypothetical protein | SAMN05421757_108121 | Not Available | Negative | 3997639 - 3997806 | 5559.96 |
| hypothetical protein | SAMN05421757_108122 | Not Available | Negative | 3997803 - 3998258 | 16786.6 |
| agmatinase | SAMN05421757_108123 | Not Available | Negative | 3998248 - 3999492 | 45708.6 |
| nitt/taut family transport system atp-binding protein | SAMN05421757_108124 | Not Available | Negative | 3999473 - 4000240 | 28271.9 |
| nitt/taut family transport system permease protein | SAMN05421757_108125 | Not Available | Negative | 4000398 - 4001210 | 29501.6 |
| nitt/taut family transport system substrate-binding protein | SAMN05421757_108126 | Not Available | Negative | 4001274 - 4002329 | 36962.6 |
| phospholipase_d-nuclease n-terminal | SAMN05421757_108128 | Not Available | Positive | 4002798 - 4002989 | 6915.92 |
| glycerol 3-phosphate dehydrogenase (nad(p)+) | SAMN05421757_108129 | Not Available | Positive | 4003095 - 4004237 | 39288.5 |
| hydroxymethylpyrimidine pyrophosphatase | SAMN05421757_108130 | Not Available | Positive | 4004260 - 4005099 | 30039.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
