Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-dependent fmn reductase | SAMN05421757_108110 | Not Available | Positive | 3986569 - 3987108 | 18925.6 |
| response regulator receiver protein | SAMN05421757_108111 | Not Available | Negative | 3987165 - 3987974 | 28992.9 |
| hypothetical protein | SAMN05421757_108112 | Not Available | Positive | 3988091 - 3988288 | 7025.07 |
| rna polymerase, sigma-24 subunit, rpoe | SAMN05421757_108113 | Not Available | Positive | 3988285 - 3988842 | 20421.3 |
| hypothetical protein | SAMN05421757_108114 | Not Available | Positive | 3988839 - 3990611 | 64444.9 |
| predicted purr-regulated permease perm | SAMN05421757_108115 | Not Available | Negative | 3990636 - 3991715 | 37826.4 |
| putative amidoligase enzyme | SAMN05421757_108116 | Not Available | Positive | 3991857 - 3992936 | 38992.2 |
| putative glutamine amidotransferase | SAMN05421757_108117 | Not Available | Positive | 3992936 - 3993679 | 26481.0 |
| protein of unknown function | SAMN05421757_108118 | Not Available | Negative | 3993806 - 3995029 | 44269.6 |
| prc-barrel domain-containing protein | SAMN05421757_108119 | Not Available | Negative | 3995123 - 3996049 | 32750.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
