Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murnac alpha-1-phosphate uridylyltransferase | SAMN05421757_108100 | Not Available | Positive | 3974602 - 3975300 | 24941.0 |
| double-strand break repair protein addb | SAMN05421757_108101 | Not Available | Positive | 3975293 - 3978277 | 108667.0 |
| dna helicase/exodeoxyribonuclease v, subunit a | SAMN05421757_108102 | Not Available | Positive | 3978274 - 3981660 | 123161.0 |
| thioredoxin | SAMN05421757_108103 | Not Available | Positive | 3981720 - 3982040 | 11430.6 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_108104 | Not Available | Positive | 3982231 - 3983325 | 38330.6 |
| hslv component of hsluv peptidase. threonine peptidase. merops family t01b | SAMN05421757_108105 | Not Available | Positive | 3983405 - 3983962 | 19279.3 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_108106 | Not Available | Negative | 3983976 - 3984872 | 32754.4 |
| lactoylglutathione lyase family protein | SAMN05421757_108107 | Not Available | Positive | 3984987 - 3985487 | 18655.0 |
| uncharacterized membrane protein ytja, upf0391 family | SAMN05421757_108108 | Not Available | Positive | 3985612 - 3985782 | 5900.77 |
| starvation-inducible dna-binding protein | SAMN05421757_108109 | Not Available | Positive | 3985897 - 3986394 | 17877.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
