Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_10880 | Not Available | Negative | 3958229 - 3959848 | 56211.0 |
| uroporphyrinogen-iii synthase | SAMN05421757_10881 | Not Available | Negative | 3959925 - 3960647 | 25487.6 |
| o-sialoglycoprotein endopeptidase | SAMN05421757_10882 | Not Available | Positive | 3960705 - 3961829 | 38536.4 |
| hypothetical protein | SAMN05421757_10883 | Not Available | Positive | 3961902 - 3962174 | 9581.51 |
| predicted rna-binding protein, contains pua-like domain | SAMN05421757_10884 | Not Available | Positive | 3962174 - 3962593 | 15672.5 |
| protein of unknown function | SAMN05421757_10885 | Not Available | Positive | 3962609 - 3962992 | 13118.3 |
| protein of unknown function | SAMN05421757_10886 | Not Available | Negative | 3963368 - 3963709 | 12540.0 |
| transcriptional regulator, marr family | SAMN05421757_10887 | Not Available | Negative | 3963817 - 3964284 | 17197.6 |
| peroxiredoxin, ohr subfamily | SAMN05421757_10888 | Not Available | Positive | 3964397 - 3964822 | 14293.8 |
| bon domain-containing protein | SAMN05421757_10889 | Not Available | Negative | 3964880 - 3965305 | 14826.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
