Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein endopeptidase. metallo peptidase. merops family m74 | SAMN05421757_10849 | Not Available | Positive | 3923769 - 3924662 | 32471.0 |
| hypothetical protein | SAMN05421757_10850 | Not Available | Positive | 3924635 - 3925525 | 32359.0 |
| hypothetical protein | SAMN05421757_10851 | Not Available | Positive | 3925616 - 3926248 | 22565.1 |
| ribosome-associated protein | SAMN05421757_10853 | Not Available | Positive | 3926596 - 3927018 | 15926.2 |
| 4-aminobutyrate aminotransferase | SAMN05421757_10854 | Not Available | Positive | 3927024 - 3928289 | 45153.4 |
| ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonist | SAMN05421757_10855 | Not Available | Positive | 3928301 - 3929221 | 33253.6 |
| nicotinate phosphoribosyltransferase | SAMN05421757_10856 | Not Available | Negative | 3929226 - 3930518 | 49774.9 |
| pas/pac sensor hybrid histidine kinase | SAMN05421757_10857 | Not Available | Negative | 3930611 - 3932995 | 86340.0 |
| nicotinamidase/pyrazinamidase | SAMN05421757_10858 | Not Available | Negative | 3933098 - 3933700 | 21788.8 |
| upf0176 protein | SAMN05421757_10859 | Not Available | Positive | 3933794 - 3934702 | 33685.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
