Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyldiaminopimelate desuccinylase | SAMN05421757_10839 | Not Available | Positive | 3914285 - 3915424 | 40067.4 |
| 23s rrna m(2)a-2503 methyltransferase | SAMN05421757_10840 | Not Available | Positive | 3915688 - 3916875 | 44032.0 |
| uncharacterized membrane protein hded, duf308 family | SAMN05421757_10841 | Not Available | Negative | 3916913 - 3917437 | 18383.5 |
| methyltransferase domain-containing protein | SAMN05421757_10842 | Not Available | Negative | 3917514 - 3918161 | 23710.0 |
| hypothetical protein | SAMN05421757_10843 | Not Available | Negative | 3918164 - 3919015 | 31630.8 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | SAMN05421757_10844 | Not Available | Positive | 3919182 - 3920021 | 29828.6 |
| hypothetical protein | SAMN05421757_10845 | Not Available | Positive | 3920227 - 3921225 | 35710.1 |
| hypothetical protein | SAMN05421757_10846 | Not Available | Positive | 3921268 - 3921615 | 12404.6 |
| hypothetical protein | SAMN05421757_10847 | Not Available | Positive | 3921772 - 3922335 | 19782.6 |
| mfs transporter, umf1 family | SAMN05421757_10848 | Not Available | Positive | 3922432 - 3923805 | 48679.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
