Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna processing protein rimm | SAMN05421757_101329 | Not Available | Negative | 356142 - 356645 | 17656.2 |
| hypothetical protein | SAMN05421757_101330 | Not Available | Negative | 356638 - 356790 | 5299.51 |
| ssu ribosomal protein s16p | SAMN05421757_101331 | Not Available | Negative | 356815 - 357213 | 14486.3 |
| chorismate mutase | SAMN05421757_101332 | Not Available | Negative | 357260 - 357562 | 11416.5 |
| protein n-acetyltransferase, rimj/riml family | SAMN05421757_101333 | Not Available | Negative | 357549 - 358154 | 23093.4 |
| protein n-acetyltransferase, rimj/riml family | SAMN05421757_101334 | Not Available | Negative | 358154 - 358702 | 20603.3 |
| protein n-acetyltransferase, rimj/riml family | SAMN05421757_101335 | Not Available | Negative | 358699 - 359781 | 39639.7 |
| protein n-acetyltransferase, rimj/riml family | SAMN05421757_101336 | Not Available | Negative | 359882 - 360418 | 19203.1 |
| signal recognition particle subunit ffh/srp54 (srp54) | SAMN05421757_101337 | Not Available | Negative | 360423 - 361928 | 53788.4 |
| protein of unknown function | SAMN05421757_101339 | Not Available | Positive | 362214 - 362900 | 23628.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
