Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_107285 | Not Available | Negative | 3861520 - 3861684 | 5753.66 |
| hypothetical protein | SAMN05421757_107286 | Not Available | Negative | 3861754 - 3862389 | 21804.4 |
| phage integrase family protein | SAMN05421757_107287 | Not Available | Negative | 3862802 - 3863236 | 16354.7 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_1081 | Not Available | Negative | 3863463 - 3865253 | 64392.2 |
| amidase | SAMN05421757_1082 | Not Available | Negative | 3865250 - 3866209 | 33903.4 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_1083 | Not Available | Negative | 3866214 - 3867833 | 58301.8 |
| peptide/nickel transport system permease protein | SAMN05421757_1084 | Not Available | Negative | 3867902 - 3868822 | 33406.4 |
| peptide/nickel transport system permease protein | SAMN05421757_1085 | Not Available | Negative | 3868822 - 3869712 | 31649.5 |
| two-component response regulator, amir/nast family, consists of rec and rna-binding antiterminator (antar) domains | SAMN05421757_1086 | Not Available | Negative | 3869705 - 3870307 | 21998.2 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421757_1087 | Not Available | Negative | 3870304 - 3871404 | 40402.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
