Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa-transferase family iii | SAMN05421757_107275 | Not Available | Positive | 3850833 - 3852152 | 46959.2 |
| hypothetical protein | SAMN05421757_107276 | Not Available | Negative | 3852184 - 3852645 | 17794.7 |
| transcriptional regulator, deor family | SAMN05421757_107277 | Not Available | Positive | 3852927 - 3853742 | 28972.8 |
| transcriptional regulator, asnc family | SAMN05421757_107278 | Not Available | Negative | 3853739 - 3854197 | 17279.0 |
| branched-chain alpha-keto acid dehydrogenase e1 component | SAMN05421757_107279 | Not Available | Positive | 3854337 - 3855575 | 45344.3 |
| branched-chain alpha-keto acid dehydrogenase e1 component | SAMN05421757_107280 | Not Available | Positive | 3855566 - 3856585 | 37160.6 |
| 2-oxoisovalerate dehydrogenase e2 component (dihydrolipoyl transacylase) | SAMN05421757_107281 | Not Available | Positive | 3856587 - 3857768 | 42584.8 |
| hypothetical protein | SAMN05421757_107282 | Not Available | Negative | 3857871 - 3858512 | 23316.9 |
| hypothetical protein | SAMN05421757_107283 | Not Available | Negative | 3859192 - 3859821 | 23609.0 |
| hypothetical protein | SAMN05421757_107284 | Not Available | Negative | 3860966 - 3861142 | 6516.21 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
