Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent glutamate synthase beta chain | SAMN05421757_107215 | Not Available | Positive | 3790952 - 3792661 | 61822.9 |
| uncharacterized membrane protein yeih | SAMN05421757_107216 | Not Available | Negative | 3792716 - 3793324 | 21141.7 |
| dnaj like chaperone protein | SAMN05421757_107217 | Not Available | Negative | 3793335 - 3794006 | 24788.4 |
| phosphinothricin acetyltransferase | SAMN05421757_107218 | Not Available | Negative | 3794016 - 3794513 | 17535.9 |
| methylmalonyl-coa mutase | SAMN05421757_107219 | Not Available | Negative | 3794723 - 3796867 | 77753.7 |
| hypothetical protein | SAMN05421757_107220 | Not Available | Negative | 3797071 - 3797823 | 25241.2 |
| protein of unknown function | SAMN05421757_107221 | Not Available | Positive | 3797959 - 3798444 | 17823.6 |
| hypothetical protein | SAMN05421757_107222 | Not Available | Negative | 3798461 - 3800026 | 55420.6 |
| biotin carboxyl carrier protein /biotin carboxylase | SAMN05421757_107223 | Not Available | Negative | 3800023 - 3802023 | 72951.5 |
| hypothetical protein | SAMN05421757_107224 | Not Available | Negative | 3802165 - 3802374 | 6364.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
