Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase | SAMN05421757_107195 | Not Available | Negative | 3767374 - 3768717 | 48962.8 |
| putrescine transport system permease protein | SAMN05421757_107196 | Not Available | Negative | 3768734 - 3769549 | 29331.6 |
| putrescine transport system permease protein | SAMN05421757_107197 | Not Available | Negative | 3769546 - 3770442 | 33494.6 |
| putrescine transport system atp-binding protein | SAMN05421757_107198 | Not Available | Negative | 3770447 - 3771598 | 43026.8 |
| putrescine transport system substrate-binding protein | SAMN05421757_107199 | Not Available | Negative | 3771668 - 3772753 | 39715.7 |
| transcriptional regulator, gntr family | SAMN05421757_107200 | Not Available | Positive | 3772914 - 3773582 | 24729.7 |
| glutamine synthetase | SAMN05421757_107201 | Not Available | Positive | 3773712 - 3775085 | 51501.7 |
| putrescine aminotransferase | SAMN05421757_107202 | Not Available | Positive | 3775101 - 3776492 | 49911.8 |
| hypothetical protein | SAMN05421757_107203 | Not Available | Negative | 3776607 - 3777779 | 41779.5 |
| gamma-glutamylputrescine oxidase | SAMN05421757_107204 | Not Available | Positive | 3777886 - 3779199 | 47590.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
