Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione synthase | SAMN05421757_107185 | Not Available | Negative | 3753631 - 3754575 | 35342.6 |
| putative endonuclease | SAMN05421757_107186 | Not Available | Negative | 3754641 - 3754994 | 12874.5 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN05421757_107187 | Not Available | Negative | 3754991 - 3755884 | 31931.3 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421757_107188 | Not Available | Positive | 3755979 - 3757148 | 39460.7 |
| utp--glnb (protein pii) uridylyltransferase, glnd | SAMN05421757_107189 | Not Available | Positive | 3757108 - 3759924 | 106390.0 |
| putative peptidoglycan lipid ii flippase | SAMN05421757_107190 | Not Available | Positive | 3759921 - 3761471 | 55422.0 |
| dna-binding transcriptional regulator, marr family | SAMN05421757_107191 | Not Available | Positive | 3761690 - 3762178 | 18059.8 |
| rnd family efflux transporter, mfp subunit | SAMN05421757_107192 | Not Available | Positive | 3762175 - 3763248 | 37560.9 |
| multidrug efflux pump subunit acrb | SAMN05421757_107193 | Not Available | Positive | 3763259 - 3766327 | 110333.0 |
| fructose-1,6-bisphosphatase | SAMN05421757_107194 | Not Available | Negative | 3766389 - 3767240 | 30720.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
