Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin or thiamine biosynthesis adenylyltransferase | SAMN05421757_107175 | Not Available | Negative | 3744499 - 3745539 | 36973.1 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | SAMN05421757_107176 | Not Available | Negative | 3745539 - 3746006 | 16436.8 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN05421757_107177 | Not Available | Negative | 3746003 - 3747199 | 41526.8 |
| haem-binding uptake, tiki superfamily, chan | SAMN05421757_107178 | Not Available | Negative | 3747274 - 3748092 | 28905.2 |
| rna polymerase, sigma 32 subunit, rpoh | SAMN05421757_107179 | Not Available | Negative | 3748089 - 3748967 | 33267.5 |
| adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase | SAMN05421757_107180 | Not Available | Positive | 3749068 - 3749601 | 19216.1 |
| broad specificity phosphatase phoe | SAMN05421757_107181 | Not Available | Positive | 3749595 - 3750167 | 21344.8 |
| glutathione s-transferase | SAMN05421757_107182 | Not Available | Positive | 3750286 - 3751161 | 31953.9 |
| magnesium chelatase family protein | SAMN05421757_107183 | Not Available | Positive | 3751210 - 3752724 | 52758.4 |
| acetyl esterase/lipase | SAMN05421757_107184 | Not Available | Negative | 3752747 - 3753634 | 32354.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
