Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prepilin peptidase cpaa | SAMN05421757_107165 | Not Available | Positive | 3732335 - 3732838 | 18039.8 |
| hypothetical protein | SAMN05421757_107166 | Not Available | Negative | 3732826 - 3734439 | 57321.4 |
| hypothetical protein | SAMN05421757_107167 | Not Available | Positive | 3734628 - 3735881 | 46945.9 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN05421757_107168 | Not Available | Positive | 3735978 - 3738386 | 88645.7 |
| glyoxylate reductase | SAMN05421757_107169 | Not Available | Negative | 3738527 - 3739513 | 36171.9 |
| sh3-like domain-containing protein | SAMN05421757_107170 | Not Available | Positive | 3739615 - 3740163 | 20174.1 |
| peptidyl-dipeptidase dcp metallo peptidase. merops family m03a | SAMN05421757_107171 | Not Available | Negative | 3740194 - 3742221 | 74762.0 |
| protein of unknown function | SAMN05421757_107172 | Not Available | Negative | 3742284 - 3742715 | 14675.2 |
| amino acid abc transporter membrane protein, paat family | SAMN05421757_107173 | Not Available | Negative | 3742799 - 3743596 | 29424.8 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05421757_107174 | Not Available | Negative | 3743638 - 3744432 | 28557.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
