Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN05421757_107145 | Not Available | Positive | 3713751 - 3715148 | 51114.3 |
| 3-oxoacid coa-transferase subunit a | SAMN05421757_107146 | Not Available | Positive | 3715268 - 3715972 | 25424.7 |
| 3-oxoacid coa-transferase subunit b | SAMN05421757_107147 | Not Available | Positive | 3715972 - 3716598 | 22038.8 |
| conserved hypothetical protein | SAMN05421757_107148 | Not Available | Positive | 3716751 - 3717767 | 36263.3 |
| decaprenylphospho-beta-d-ribofuranose 2-oxidase | SAMN05421757_107149 | Not Available | Positive | 3717748 - 3719052 | 47642.6 |
| short-chain dehydrogenase | SAMN05421757_107150 | Not Available | Positive | 3719052 - 3719816 | 27145.9 |
| soluble lytic murein transglycosylase | SAMN05421757_107151 | Not Available | Negative | 3719829 - 3720758 | 32593.9 |
| hypothetical protein | SAMN05421757_107152 | Not Available | Positive | 3721104 - 3721298 | 6682.08 |
| hypothetical protein | SAMN05421757_107153 | Not Available | Positive | 3721558 - 3721752 | 6682.08 |
| hypothetical protein | SAMN05421757_107154 | Not Available | Positive | 3722024 - 3722218 | 6684.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
