Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit 3 | SAMN05421757_107135 | Not Available | Negative | 3703796 - 3704596 | 30241.9 |
| cytochrome c oxidase assembly protein subunit 11 | SAMN05421757_107136 | Not Available | Negative | 3704614 - 3705186 | 21189.2 |
| hypothetical protein | SAMN05421757_107137 | Not Available | Negative | 3705183 - 3705353 | 5992.52 |
| protoheme ix farnesyltransferase | SAMN05421757_107138 | Not Available | Negative | 3705350 - 3706294 | 34098.3 |
| cytochrome c oxidase subunit 2 | SAMN05421757_107139 | Not Available | Negative | 3706328 - 3707224 | 32539.1 |
| tldd protein | SAMN05421757_107140 | Not Available | Positive | 3707412 - 3708842 | 49817.8 |
| ribosomal protein s18 acetylase rimi | SAMN05421757_107141 | Not Available | Positive | 3708839 - 3709342 | 18025.4 |
| dna protecting protein dpra | SAMN05421757_107142 | Not Available | Positive | 3709562 - 3710617 | 36238.7 |
| dna topoisomerase i | SAMN05421757_107143 | Not Available | Positive | 3710751 - 3713384 | 97338.6 |
| protein of unknown function | SAMN05421757_107144 | Not Available | Negative | 3713429 - 3713662 | 8759.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
