Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative proteasome-type protease | SAMN05421757_101309 | Not Available | Negative | 338183 - 338917 | 27087.4 |
| transglutaminase-like enzyme, putative cysteine protease | SAMN05421757_101310 | Not Available | Negative | 338951 - 339754 | 29120.1 |
| uncharacterized conserved protein, alpha-e superfamily | SAMN05421757_101311 | Not Available | Negative | 339758 - 340699 | 35208.6 |
| uncharacterized conserved protein, circularly permuted atpgrasp superfamily | SAMN05421757_101312 | Not Available | Negative | 340704 - 342131 | 52711.9 |
| d-tyrosyl-trna(tyr) deacylase | SAMN05421757_101313 | Not Available | Negative | 342267 - 342719 | 15891.0 |
| fructokinase | SAMN05421757_101314 | Not Available | Negative | 342716 - 343648 | 32194.6 |
| heat shock protein hsp20 | SAMN05421757_101315 | Not Available | Positive | 343804 - 344220 | 15169.7 |
| hypothetical protein | SAMN05421757_101316 | Not Available | Negative | 344227 - 345402 | 43696.7 |
| membrane protease subunit, stomatin/prohibitin family, contains c-terminal zn-ribbon domain | SAMN05421757_101317 | Not Available | Negative | 345416 - 346564 | 41213.2 |
| protein of unknown function | SAMN05421757_101318 | Not Available | Negative | 346592 - 347557 | 34790.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
