Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_107105 | Not Available | Negative | 3666466 - 3667395 | 34997.5 |
| protein of unknown function | SAMN05421757_107106 | Not Available | Positive | 3667599 - 3668306 | 25250.1 |
| outer membrane scaffolding protein for murein synthesis, mipa/ompv family | SAMN05421757_107107 | Not Available | Negative | 3668368 - 3669228 | 31067.1 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN05421757_107108 | Not Available | Negative | 3669366 - 3669779 | 14099.8 |
| hypothetical protein | SAMN05421757_107109 | Not Available | Negative | 3669776 - 3670183 | 13890.6 |
| lipoprotein-releasing system atp-binding protein | SAMN05421757_107110 | Not Available | Negative | 3670269 - 3670952 | 23684.6 |
| lipoprotein-releasing system permease protein | SAMN05421757_107111 | Not Available | Negative | 3670945 - 3672231 | 46166.1 |
| methylglyoxal synthase | SAMN05421757_107112 | Not Available | Negative | 3672323 - 3672754 | 14939.1 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_107113 | Not Available | Positive | 3673203 - 3677663 | 159030.0 |
| selenocysteine lyase/cysteine desulfurase | SAMN05421757_107114 | Not Available | Negative | 3677682 - 3679115 | 51422.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
