Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine phosphatase family protein | SAMN05421757_10775 | Not Available | Positive | 3637746 - 3638441 | 27241.8 |
| atp-binding cassette, subfamily b, msba | SAMN05421757_10776 | Not Available | Positive | 3638438 - 3640243 | 65955.6 |
| hypothetical protein | SAMN05421757_10777 | Not Available | Positive | 3640327 - 3641082 | 27739.3 |
| fructosamine-3-kinase | SAMN05421757_10778 | Not Available | Positive | 3641070 - 3641885 | 29585.3 |
| translation elongation factor p (ef-p) | SAMN05421757_10779 | Not Available | Negative | 3641952 - 3642515 | 21007.1 |
| hypothetical protein | SAMN05421757_10780 | Not Available | Positive | 3642731 - 3643051 | 11578.4 |
| hypothetical protein | SAMN05421757_10781 | Not Available | Negative | 3643500 - 3644807 | 47493.3 |
| outer membrane protein | SAMN05421757_10782 | Not Available | Negative | 3644931 - 3646334 | 50731.1 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN05421757_10783 | Not Available | Negative | 3646396 - 3647049 | 23156.9 |
| luxr family transcriptional regulator | SAMN05421757_10784 | Not Available | Negative | 3647174 - 3647665 | 18497.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
