Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase | SAMN05421757_10755 | Not Available | Positive | 3617022 - 3617816 | 30063.8 |
| 2-isopropylmalate synthase | SAMN05421757_10756 | Not Available | Positive | 3618034 - 3619599 | 57301.2 |
| rod shape-determining protein mreb | SAMN05421757_10757 | Not Available | Positive | 3619846 - 3620883 | 36588.4 |
| rod shape-determining protein mrec | SAMN05421757_10758 | Not Available | Positive | 3620955 - 3621860 | 32774.3 |
| rod shape-determining protein mred | SAMN05421757_10759 | Not Available | Positive | 3621853 - 3622392 | 19267.2 |
| peptidoglycan glycosyltransferase | SAMN05421757_10760 | Not Available | Positive | 3622389 - 3624308 | 70210.2 |
| cell elongation-specific peptidoglycan biosynthesis regulator roda | SAMN05421757_10761 | Not Available | Positive | 3624305 - 3625453 | 41700.2 |
| glyoxylate/hydroxypyruvate reductase a | SAMN05421757_10762 | Not Available | Positive | 3625450 - 3626385 | 33545.1 |
| alpha/beta hydrolase fold | SAMN05421757_10763 | Not Available | Positive | 3626451 - 3627260 | 29503.3 |
| hypothetical protein | SAMN05421757_10764 | Not Available | Negative | 3627370 - 3627945 | 19628.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
