Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydroxymethylpyrimidine transport system atp-binding protein | SAMN05421757_10734 | Not Available | Negative | 3596697 - 3597422 | 25283.8 |
| putative hydroxymethylpyrimidine transport system substrate-binding protein | SAMN05421757_10735 | Not Available | Negative | 3597419 - 3598354 | 34064.8 |
| hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase | SAMN05421757_10736 | Not Available | Negative | 3598373 - 3599188 | 27124.7 |
| thiamine-phosphate diphosphorylase | SAMN05421757_10737 | Not Available | Negative | 3599185 - 3599823 | 21173.6 |
| hydroxyethylthiazole kinase | SAMN05421757_10738 | Not Available | Negative | 3599820 - 3600608 | 25975.1 |
| acetate coa/acetoacetate coa-transferase beta subunit | SAMN05421757_10740 | Not Available | Negative | 3600825 - 3601478 | 22774.1 |
| acetate coa/acetoacetate coa-transferase alpha subunit | SAMN05421757_10741 | Not Available | Negative | 3601480 - 3602133 | 22488.5 |
| crotonobetainyl-coa:carnitine coa-transferase caib | SAMN05421757_10742 | Not Available | Positive | 3602285 - 3603394 | 39453.1 |
| malonyl-coa/methylmalonyl-coa synthetase | SAMN05421757_10743 | Not Available | Negative | 3603487 - 3605001 | 54953.8 |
| glutamyl-trna synthetase /glutamate--trna(gln) ligase | SAMN05421757_10744 | Not Available | Negative | 3605541 - 3606860 | 48905.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
