Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fur family transcriptional regulator, zinc uptake regulator | SAMN05421757_10714 | Not Available | Positive | 3577498 - 3577998 | 18169.7 |
| zinc transport system atp-binding protein | SAMN05421757_10715 | Not Available | Positive | 3577998 - 3578768 | 27620.4 |
| zinc transport system permease protein | SAMN05421757_10716 | Not Available | Positive | 3578768 - 3579559 | 26505.1 |
| galactokinase | SAMN05421757_10717 | Not Available | Negative | 3579570 - 3580685 | 38596.0 |
| fructuronate reductase | SAMN05421757_10718 | Not Available | Negative | 3580846 - 3582270 | 51769.9 |
| 2-deoxy-d-gluconate 3-dehydrogenase | SAMN05421757_10719 | Not Available | Negative | 3582260 - 3582991 | 25163.1 |
| 4-deoxy-l-threo-5-hexulose uronate isomerase | SAMN05421757_10720 | Not Available | Negative | 3582988 - 3583812 | 30157.7 |
| glucuronate isomerase | SAMN05421757_10721 | Not Available | Negative | 3583906 - 3585312 | 53036.3 |
| transcriptional regulator, gntr family | SAMN05421757_10722 | Not Available | Positive | 3585413 - 3586117 | 26461.6 |
| predicted oxidoreductase | SAMN05421757_10723 | Not Available | Positive | 3586164 - 3587159 | 35599.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
