Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421757_101299 | Not Available | Negative | 330872 - 331414 | 19881.5 |
| protein of unknown function | SAMN05421757_101300 | Not Available | Negative | 331490 - 332053 | 22084.4 |
| hypothetical protein | SAMN05421757_101301 | Not Available | Negative | 332063 - 332329 | 10170.5 |
| hypothetical protein | SAMN05421757_101302 | Not Available | Negative | 332451 - 332678 | 8199.19 |
| succinyl-diaminopimelate desuccinylase | SAMN05421757_101303 | Not Available | Positive | 332835 - 334133 | 47036.1 |
| peptide/nickel transport system permease protein | SAMN05421757_101304 | Not Available | Positive | 334313 - 335260 | 33509.1 |
| peptide/nickel transport system permease protein | SAMN05421757_101305 | Not Available | Positive | 335257 - 336078 | 28478.9 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_101306 | Not Available | Positive | 336075 - 337637 | 55979.2 |
| hemin uptake protein hemp | SAMN05421757_101307 | Not Available | Negative | 337716 - 337886 | 6069.55 |
| hypothetical protein | SAMN05421757_101308 | Not Available | Negative | 337883 - 338005 | 4326.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
