Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate kinase | SAMN05421757_1074 | Not Available | Positive | 3567031 - 3567684 | 24018.4 |
| dna polymerase iii, delta prime subunit | SAMN05421757_1075 | Not Available | Positive | 3567684 - 3568826 | 40762.0 |
| tatd dnase family protein | SAMN05421757_1076 | Not Available | Positive | 3568837 - 3569640 | 28966.3 |
| phosphoribosyl 1,2-cyclic phosphate phosphodiesterase | SAMN05421757_1077 | Not Available | Positive | 3569640 - 3570437 | 29199.8 |
| hypothetical protein | SAMN05421757_1078 | Not Available | Positive | 3570441 - 3571376 | 33228.5 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_1079 | Not Available | Negative | 3571444 - 3572355 | 33152.1 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_10710 | Not Available | Negative | 3572444 - 3573745 | 47629.5 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05421757_10711 | Not Available | Negative | 3573843 - 3574916 | 38577.2 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05421757_10712 | Not Available | Negative | 3574991 - 3576091 | 41033.6 |
| zinc transport system substrate-binding protein | SAMN05421757_10713 | Not Available | Negative | 3576374 - 3577423 | 37650.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
