Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylmethylamide synthetase | SAMN05421757_106245 | Not Available | Negative | 3518681 - 3520000 | 48538.6 |
| n-methylglutamate synthase subunit c precursor | SAMN05421757_106246 | Not Available | Negative | 3520064 - 3521389 | 47050.1 |
| n-methylglutamate synthase subunit b | SAMN05421757_106247 | Not Available | Negative | 3521401 - 3522084 | 24024.6 |
| n-methylglutamate synthase subunit a | SAMN05421757_106248 | Not Available | Negative | 3522086 - 3522973 | 31343.4 |
| transcriptional regulator, xre family with cupin sensor | SAMN05421757_106249 | Not Available | Negative | 3523164 - 3523829 | 24387.3 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05421757_106250 | Not Available | Positive | 3524116 - 3525093 | 36568.3 |
| dna repair exonuclease sbccd nuclease subunit | SAMN05421757_106251 | Not Available | Positive | 3525245 - 3526372 | 41279.9 |
| dna repair exonuclease sbccd atpase subunit | SAMN05421757_106252 | Not Available | Positive | 3526369 - 3528969 | 92480.7 |
| superfamily ii dna or rna helicase | SAMN05421757_106253 | Not Available | Positive | 3528977 - 3531922 | 107034.0 |
| putative cardiolipin synthase | SAMN05421757_106254 | Not Available | Negative | 3531942 - 3533534 | 58211.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
