Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin-nadp reductase | SAMN05421757_106235 | Not Available | Negative | 3507037 - 3507984 | 34163.9 |
| hypothetical protein | SAMN05421757_106236 | Not Available | Negative | 3507981 - 3508583 | 21192.6 |
| aminomethyltransferase | SAMN05421757_106237 | Not Available | Negative | 3508638 - 3509771 | 41845.9 |
| hypothetical protein | SAMN05421757_106238 | Not Available | Negative | 3509829 - 3510002 | 6182.34 |
| ammonium transporter | SAMN05421757_106239 | Not Available | Negative | 3510030 - 3511409 | 48606.7 |
| aminomethyltransferase | SAMN05421757_106240 | Not Available | Negative | 3511477 - 3513849 | 86076.2 |
| trimethylamine monooxygenase | SAMN05421757_106241 | Not Available | Negative | 3513910 - 3515253 | 50969.8 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421757_106242 | Not Available | Positive | 3515442 - 3516764 | 48708.1 |
| transcriptional regulator, gntr family | SAMN05421757_106243 | Not Available | Negative | 3516721 - 3517557 | 31071.2 |
| formyltetrahydrofolate deformylase | SAMN05421757_106244 | Not Available | Negative | 3517600 - 3518484 | 32967.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
