Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidase | SAMN05421757_106225 | Not Available | Positive | 3497581 - 3498756 | 40382.2 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05421757_106226 | Not Available | Positive | 3498753 - 3499217 | 16072.6 |
| allantoin racemase | SAMN05421757_106227 | Not Available | Negative | 3499379 - 3500020 | 21872.5 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_106228 | Not Available | Negative | 3500021 - 3500863 | 30599.8 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_106229 | Not Available | Negative | 3500865 - 3501815 | 35671.6 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05421757_106230 | Not Available | Negative | 3501841 - 3503124 | 47042.8 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05421757_106231 | Not Available | Negative | 3503162 - 3504145 | 35378.6 |
| transcriptional regulator, gntr family | SAMN05421757_106232 | Not Available | Positive | 3504386 - 3505078 | 25154.0 |
| ribosomal protein s18 acetylase rimi | SAMN05421757_106233 | Not Available | Positive | 3505075 - 3505902 | 29565.3 |
| protein of unknown function | SAMN05421757_106234 | Not Available | Negative | 3505990 - 3507027 | 40259.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
