Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase nickel incorporation protein hypb | SAMN05421757_106215 | Not Available | Negative | 3488846 - 3489586 | 26035.1 |
| hydrogenase nickel incorporation protein hypa/hybf | SAMN05421757_106216 | Not Available | Negative | 3489579 - 3489962 | 13613.4 |
| hydrogenase maturation protein hypc | SAMN05421757_106217 | Not Available | Negative | 3489955 - 3490182 | 8126.88 |
| 2-keto-4-pentenoate hydratase | SAMN05421757_106218 | Not Available | Negative | 3490322 - 3491044 | 25062.0 |
| asp/glu/hydantoin racemase | SAMN05421757_106219 | Not Available | Negative | 3491028 - 3491678 | 22046.7 |
| abc-type transport system, substrate-binding protein | SAMN05421757_106220 | Not Available | Positive | 3492024 - 3493625 | 59317.2 |
| peptide/nickel transport system permease protein | SAMN05421757_106221 | Not Available | Positive | 3493700 - 3494653 | 34031.4 |
| peptide/nickel transport system permease protein | SAMN05421757_106222 | Not Available | Positive | 3494657 - 3495535 | 30713.4 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_106223 | Not Available | Positive | 3495522 - 3496595 | 39028.8 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_106224 | Not Available | Positive | 3496592 - 3497572 | 35386.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
