Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidase | SAMN05421757_106195 | Not Available | Negative | 3461500 - 3462918 | 49629.9 |
| spermidine/putrescine transport system substrate-binding protein | SAMN05421757_106196 | Not Available | Negative | 3462990 - 3464015 | 37781.8 |
| spermidine/putrescine transport system permease protein | SAMN05421757_106197 | Not Available | Negative | 3464051 - 3464854 | 29362.5 |
| spermidine/putrescine transport system permease protein | SAMN05421757_106198 | Not Available | Negative | 3464847 - 3465755 | 33835.1 |
| spermidine/putrescine transport system atp-binding protein | SAMN05421757_106199 | Not Available | Negative | 3465760 - 3466827 | 37941.5 |
| amidase/6-aminohexanoate-cyclic-dimer hydrolase | SAMN05421757_106200 | Not Available | Negative | 3466890 - 3468347 | 50499.3 |
| hypothetical protein | SAMN05421757_106201 | Not Available | Negative | 3468418 - 3468849 | 15328.5 |
| glycosyltransferase family 28 c-terminal domain-containing protein | SAMN05421757_106202 | Not Available | Negative | 3468849 - 3470909 | 74459.5 |
| hypothetical protein | SAMN05421757_106203 | Not Available | Negative | 3470906 - 3471982 | 38485.1 |
| hypothetical protein | SAMN05421757_106204 | Not Available | Negative | 3471987 - 3472319 | 12037.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
