Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_101289 | Not Available | Negative | 320179 - 320553 | 13151.7 |
| uncharacterized membrane protein | SAMN05421757_101290 | Not Available | Negative | 320600 - 321337 | 27662.7 |
| glycolate oxidase | SAMN05421757_101291 | Not Available | Positive | 321424 - 322857 | 50928.4 |
| glycolate oxidase fad binding subunit | SAMN05421757_101292 | Not Available | Positive | 322943 - 324073 | 38587.4 |
| glycolate oxidase iron-sulfur subunit | SAMN05421757_101293 | Not Available | Positive | 324108 - 325403 | 46713.9 |
| v8-like glu-specific endopeptidase | SAMN05421757_101294 | Not Available | Positive | 325474 - 326304 | 29880.6 |
| protease ydgd | SAMN05421757_101295 | Not Available | Positive | 326304 - 327140 | 28918.7 |
| molecular chaperone ibpa | SAMN05421757_101296 | Not Available | Positive | 327298 - 327756 | 17159.5 |
| methyltransferase, fkbm family | SAMN05421757_101297 | Not Available | Negative | 327830 - 328825 | 35237.3 |
| ca-activated chloride channel family protein | SAMN05421757_101298 | Not Available | Negative | 328899 - 330875 | 69524.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
