Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malonyl-coa decarboxylase | SAMN05421757_106175 | Not Available | Positive | 3440661 - 3441908 | 45795.5 |
| malonyl-coa/methylmalonyl-coa synthetase | SAMN05421757_106176 | Not Available | Positive | 3441922 - 3443439 | 55269.1 |
| upf0271 protein | SAMN05421757_106177 | Not Available | Negative | 3443502 - 3444290 | 27112.4 |
| allophanate hydrolase | SAMN05421757_106178 | Not Available | Negative | 3444287 - 3445312 | 35967.1 |
| sensor histidine kinase inhibitor, kipi family | SAMN05421757_106179 | Not Available | Negative | 3445309 - 3446067 | 27275.3 |
| trap transporter, dctm subunit | SAMN05421757_106180 | Not Available | Negative | 3446104 - 3447387 | 44865.2 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_106181 | Not Available | Negative | 3447384 - 3447932 | 19873.5 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421757_106182 | Not Available | Negative | 3447954 - 3448991 | 36197.7 |
| uncharacterized protein ycsi, upf0317 family | SAMN05421757_106183 | Not Available | Negative | 3448988 - 3449842 | 30509.5 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_106184 | Not Available | Negative | 3449918 - 3450817 | 32946.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
