Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN05421757_106165 | Not Available | Positive | 3432445 - 3433140 | 26054.0 |
| predicted metal-dependent hydrolase, tim-barrel fold | SAMN05421757_106166 | Not Available | Negative | 3433243 - 3434142 | 33490.9 |
| hydroxyquinol 1,2-dioxygenase | SAMN05421757_106167 | Not Available | Negative | 3434191 - 3435066 | 32260.8 |
| trap transporter, dctm subunit | SAMN05421757_106168 | Not Available | Negative | 3435080 - 3436387 | 46601.5 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_106169 | Not Available | Negative | 3436384 - 3436950 | 20938.0 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421757_106170 | Not Available | Negative | 3436976 - 3438061 | 38794.3 |
| uncharacterized osmc-related protein | SAMN05421757_106171 | Not Available | Negative | 3438091 - 3438546 | 16356.4 |
| 3-hydroxypropanoate dehydrogenase | SAMN05421757_106172 | Not Available | Negative | 3438556 - 3439221 | 24474.2 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05421757_106173 | Not Available | Negative | 3439218 - 3440099 | 30984.0 |
| hypothetical protein | SAMN05421757_106174 | Not Available | Positive | 3440205 - 3440591 | 13858.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
