Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfide dehydrogenase (flavoprotein) subunit suda /sulfide dehydrogenase (flavoprotein) subunit sudb | SAMN05421757_106155 | Not Available | Positive | 3420790 - 3423549 | 100223.0 |
| hemolysin iii | SAMN05421757_106156 | Not Available | Negative | 3423595 - 3424266 | 23768.9 |
| hypothetical protein | SAMN05421757_106157 | Not Available | Positive | 3424507 - 3424617 | 3968.85 |
| dihydropteridine reductase | SAMN05421757_106158 | Not Available | Positive | 3424775 - 3425443 | 24923.5 |
| transcriptional regulator, laci family | SAMN05421757_106159 | Not Available | Negative | 3425501 - 3426523 | 36550.1 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_106160 | Not Available | Positive | 3426832 - 3428100 | 45393.7 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_106161 | Not Available | Positive | 3428197 - 3429042 | 30795.0 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_106162 | Not Available | Positive | 3429039 - 3429881 | 30285.8 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_106163 | Not Available | Positive | 3429913 - 3430956 | 37741.8 |
| trehalase | SAMN05421757_106164 | Not Available | Positive | 3430966 - 3432243 | 48065.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
