Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar motor switch protein flig | SAMN05421757_106125 | Not Available | Positive | 3386426 - 3387553 | 39762.0 |
| kdo2-lipid iv(a) lauroyltransferase | SAMN05421757_106126 | Not Available | Positive | 3387909 - 3388871 | 35784.0 |
| hypothetical protein | SAMN05421757_106127 | Not Available | Negative | 3388874 - 3389584 | 25599.7 |
| regulatory protein, luxr family | SAMN05421757_106128 | Not Available | Negative | 3389690 - 3390163 | 17413.9 |
| aconitase | SAMN05421757_106129 | Not Available | Positive | 3390450 - 3393140 | 97305.8 |
| cytochrome c-type biogenesis protein | SAMN05421757_106130 | Not Available | Negative | 3393284 - 3394036 | 26548.4 |
| trna 2-thiouridine synthesizing protein a | SAMN05421757_106131 | Not Available | Positive | 3394165 - 3394395 | 8116.91 |
| rnase e | SAMN05421757_106132 | Not Available | Negative | 3394457 - 3397681 | 117359.0 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN05421757_106133 | Not Available | Negative | 3398143 - 3398814 | 23596.2 |
| two component, sigma54 specific, transcriptional regulator, fis family | SAMN05421757_106134 | Not Available | Negative | 3398811 - 3400142 | 48718.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
