Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitt/taut family transport system atp-binding protein | SAMN05421757_106115 | Not Available | Positive | 3373393 - 3374568 | 41616.0 |
| nitrate/nitrite transport system substrate-binding protein | SAMN05421757_106116 | Not Available | Positive | 3374856 - 3376226 | 50360.4 |
| nitrate/nitrite transport system permease protein | SAMN05421757_106117 | Not Available | Positive | 3376349 - 3377434 | 39626.6 |
| nitrate/nitrite transport system atp-binding protein | SAMN05421757_106118 | Not Available | Positive | 3377440 - 3379158 | 62884.9 |
| gaf domain-containing protein | SAMN05421757_106119 | Not Available | Positive | 3379158 - 3380090 | 33000.4 |
| nitric oxide dioxygenase | SAMN05421757_106120 | Not Available | Positive | 3380111 - 3380533 | 15084.1 |
| assimilatory nitrite reductase (nad(p)h) large subunit precursor | SAMN05421757_106121 | Not Available | Positive | 3380530 - 3382983 | 88232.2 |
| assimilatory nitrite reductase (nad(p)h) small subunit | SAMN05421757_106122 | Not Available | Positive | 3383075 - 3383410 | 11795.0 |
| assimilatory nitrate reductase (nadh) alpha subunit apoprotein | SAMN05421757_106123 | Not Available | Positive | 3383410 - 3386121 | 95754.3 |
| hypothetical protein | SAMN05421757_106124 | Not Available | Positive | 3386148 - 3386312 | 5495.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
