Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis sensory transducer with pas/pac sensor | SAMN05421757_106105 | Not Available | Negative | 3362953 - 3366036 | 109208.0 |
| 4fe-4s dicluster containing protein | SAMN05421757_106106 | Not Available | Positive | 3366327 - 3367448 | 40571.1 |
| cyclic nucleotide-binding domain-containing protein | SAMN05421757_106107 | Not Available | Positive | 3367459 - 3367929 | 17635.0 |
| nad(p)h-flavin reductase | SAMN05421757_106108 | Not Available | Positive | 3367934 - 3368776 | 30653.8 |
| coenzyme f420-reducing hydrogenase, gamma subunit | SAMN05421757_106109 | Not Available | Positive | 3368779 - 3369549 | 26569.0 |
| coenzyme f420-reducing hydrogenase, alpha subunit | SAMN05421757_106110 | Not Available | Positive | 3369542 - 3370831 | 47223.6 |
| hydrogenase maturation protease | SAMN05421757_106111 | Not Available | Positive | 3370824 - 3371264 | 15452.5 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421757_106112 | Not Available | Negative | 3371265 - 3372014 | 26373.6 |
| protein of unknown function | SAMN05421757_106113 | Not Available | Positive | 3372159 - 3372683 | 18220.8 |
| response regulator receiver and antar domain protein | SAMN05421757_106114 | Not Available | Positive | 3372812 - 3373396 | 21231.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
