Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine/homoserine efflux transporter rhta | SAMN05421757_101279 | Not Available | Positive | 313832 - 314725 | 29747.5 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN05421757_101280 | Not Available | Negative | 314695 - 315150 | 16540.8 |
| triacylglycerol esterase/lipase esta, alpha/beta hydrolase fold | SAMN05421757_101281 | Not Available | Positive | 315229 - 315990 | 25908.2 |
| hypothetical protein | SAMN05421757_101282 | Not Available | Negative | 315971 - 316210 | 8832.43 |
| hypothetical protein | SAMN05421757_101283 | Not Available | Positive | 316453 - 316740 | 10474.2 |
| hypothetical protein | SAMN05421757_101284 | Not Available | Positive | 316762 - 317025 | 9692.69 |
| uncharacterized protein family upf0029 | SAMN05421757_101285 | Not Available | Positive | 317099 - 317449 | 12905.5 |
| hypothetical protein | SAMN05421757_101286 | Not Available | Positive | 317508 - 317798 | 10324.3 |
| sulfotransferase family protein | SAMN05421757_101287 | Not Available | Negative | 317885 - 318751 | 32284.4 |
| ssu ribosomal protein s12p methylthiotransferase | SAMN05421757_101288 | Not Available | Negative | 318748 - 320130 | 50890.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
