Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nte family protein | SAMN05421757_10665 | Not Available | Negative | 3315416 - 3316459 | 38169.4 |
| 3-hydroxybutyrate dehydrogenase | SAMN05421757_10666 | Not Available | Negative | 3316519 - 3317292 | 27124.4 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_10667 | Not Available | Positive | 3317639 - 3319453 | 67626.5 |
| ssu ribosomal protein s9p | SAMN05421757_10668 | Not Available | Negative | 3319547 - 3320035 | 17776.5 |
| lsu ribosomal protein l13p | SAMN05421757_10669 | Not Available | Negative | 3320041 - 3320499 | 17093.8 |
| uncharacterized domain 1-containing protein | SAMN05421757_10670 | Not Available | Negative | 3320690 - 3321112 | 14968.5 |
| enoyl-coa hydratase/carnithine racemase | SAMN05421757_10671 | Not Available | Positive | 3321171 - 3321962 | 28798.7 |
| dimethylglycine dehydrogenase | SAMN05421757_10672 | Not Available | Positive | 3322227 - 3324641 | 88323.3 |
| hypothetical protein | SAMN05421757_10673 | Not Available | Negative | 3324649 - 3324978 | 11838.4 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_10674 | Not Available | Negative | 3325380 - 3327527 | 77097.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
